MIST: The MITRE Identification Scrubber Toolkit
Getting started
Overview
System requirements, conventions, and installation instructions
Unix
MacOS X
Windows native
Cygwin
Browser requirements
Web server requirements
Working with the toolkit
Upgrade notes
MAT license
Bundle license
Deidentification customizations
General
AMIA
HIPAA
Tutorials
Tutorial 1: load and hand tag a document
Tutorial 2: build a model
Tutorial 3: automated tagging in the UI
Tutorial 4: view the Web demo
Tutorial 5: use the command line engine and scorer
Tutorial 6: workspaces
Tutorial 7: the experiment engine
Core annotation system
Tasks, annotations, workflows, and steps
Files and workspaces
Readers and writers
The default Carafe engine
The sample task
Web interface
Starting the Web server
Starting the UI
Using the UI
The UI logger
The UI and workspace security
The standalone viewer
Command-line tools
MATEngine
MATExperimentEngine
MATManagePluginDirs
MATModelBuilder
MATReport
MATRetokenize
MATScore
MATWeb
MATWorkspaceEngine
mat_controller.sh
File formats
Experiment engine XML reference
Experiment engine XML use cases
Viewing language data in CSV
Simple customizations
Creating a new task
Creating a new demo
File formats
Task XML reference
Task XML use cases
Demo XML reference
MAT JSON document format
Core developer documentation
Building from a CVS checkout
Core technologies
Customizing a task: advanced topics
Service API
Java API
Overview
Javadoc for java-mat-core library
Javadoc for java-mat-engine-client library
Creating a ZIP file
Command-line tools
build_tarball.py
redistribute.py
Version history
Known bugs
Testing
UI