• Getting started

• Overview
• How to use this documentation
• System requirements, conventions, and installation instructions
  • Unix
  • MacOS X
  • Windows native
• Browser requirements
• Web server requirements
• How do I...?

• Administrivia

• Upgrade and release notes
• Version history
• Known bugs
• MAT license
• Bundle license

• For users

• Tutorial 1: load and hand tag a document
• Tutorial 2: build a model
• Tutorial 3: automated tagging in the UI
• Tutorial 4: view the Web demo
• Tutorial 5: use the command line engine and scorer
• Tutorial 6: workspaces
• Tutorial 7: the experiment engine
• Tutorial 8: hand annotation of complex annotation sets
• What you need to know about...
  • Annotations
  • Tasks, training, and automated tagging
  • File and workspace modes
  • Using workspaces
  • Tag-a-little, learn-a-little
• Web interface
  • Starting the Web server
  • Starting and shutting down the UI
  • Span annotation
  • UI settings and configuration
  • Workspaces in the UI
  • Viewing and editing annotation details
  • Spanless annotation
• Advanced Web UI tools
  • Document comparison
  • Document alignment
  • Document reconciliation
• Advanced topics
  • Readers and writers
  • Scoring, transducing, reporting
  • The experiment engine
  • Experiment engine XML use cases
  • Viewing language data in CSV
• Command-line tools
  • Common options
  • MATEngine
  • MATExperimentEngine
  • MATManagePluginDirs
  • MATModelBuilder
  • MATReport
  • MATScore
  • MATTransducer
  • MATWeb
  • MATWorkspaceEngine

• For task maintainers

• Creating a new task
• Task XML use cases
• Annotation set descriptor XML use cases
• Creating a new demo
• Advanced workspace maintenance
• Command-line tools
  • MATRetokenize
  • MATUpdateTaskXML
  • MATUpdateWorkspace1To2

• For developers

• The standalone viewer
• Building from a CVS checkout
• Core technologies
• Customizing a task: advanced topics
• Creating reader/writers
• Service API
• Java API
  • Overview
  • Javadoc for java-mat-core library
  • Javadoc for java-mat-engine-client library
• Python API
• JavaScript API
• Command-line tools
  • build_tarball.py
  • redistribute.py
• Running the test suite
• Command-line tools
  • MATAnnotationInfoToJSON
  • MATCreateComparisonDocument

• Reference

• Annotations and annotation progress
• Tasks, workflows, and steps
• Using workspaces
• The default Carafe engine
• The sample tasks
• Scoring and comparison
• Score output
• The UI logger
• The UI and workspace security
• Experiment engine output directory structure
• File formats
  • Experiment engine XML reference
  • Annotation set descriptor XML reference
  • Annotation set descriptor JSON reference
  • Task XML reference
  • Demo XML reference
  • Document conversion XML reference
  • MAT JSON document format